2Ludwig-Maximilians-Universität München
wget
and curl
are the two standard tools that are available on most Linux and macOS computers. wget
contains a feature for downloading a list of files:
wget -x -nH -i 'https://opendata.physik.lmu.de/wenvv-xc995/?list'
curl
is missing a feature like that, but the same functionality can be created by combining curl
and xargs
:
curl 'https://opendata.physik.lmu.de/wenvv-xc995/?list' | xargs -I URL -n1 bash -c 'curl --create-dirs -o ${1:31} ${1}' -- URL
On multistability and constitutive relations of cell motion on fibronectin lanes [Data set]
This repository provides the raw data underlying the research article On multistability and constitutive relations of cell motion on fibronectin lanes published in Biophysical Journal 2023. The data are scanning time-lapse image stacks of MDA-MB-231 H2B mCherry cells migrating on Fibronectin lanes. For each experimental condition, a multitude of fields of view were imaged. The data were recorded in two different temporal resolutions, 30 s and 10 min, respectively, for a duration of up to 48 h.
For a comprehensive description of the below data sets, see sections 'Materials and Methods' and 'S1 Data Sets' of our publication.
Structure
Each data set contains tif-stacks for the phase contrast channel showing cell contours (BF
) and for the mCherry channel showing the labeled nuclei (nucleus
). XY
indicates the field of view of each stack. tif-images in the pattern
folder correspond to fluorescent images of the Fibronectin pattern at each field of view taken directly before the time-lapse stack. The first 4 digits of each tif-file indicate the date of the experiment, in the format YMD, e.g. 211119
corresponds to 19. November 2021. The temporal resolution is indicated in the name of the data set and in the name of each tif-stack ( 30s
/10min
). Each folder contains a csv-file with the original metadata as recorded by the Nikon Eclipse Ti microscope used for this study.
Examples
From left to right: Phase contrast, nucleus (mCherry) and pattern (Alexa 647) image of the same field of view.
Example images taken from 211119_FN-lines_10min_XY001
at t=100.
Data Sets
Data Set | Temporal Resolution | Treatment | Number of Measurements |
---|---|---|---|
data_set_1_ctrl_30s | 30s | control | 4 |
data_set_2_lat_30s | 30s | latrunculin A | 4 |
data_set_3_blebb_30s | 30s | blebbistatin | 4 |
data_set_4_ctrl_10min | 10min | control | 5 |
data_set_5_lat_10min | 10min | latrunculin A | 5 |
data_set_6_blebb_10min | 10min | blebbistatin | 4 |
data_set_7_untreated_10min | 10min | untreated | 1 |
Experimental Metadata
Property | Value |
---|---|
basicApproach | in vitro |
cellModel | cell line |
assay | single-cell migration |
treatment | control (DMSO) / latrunculin A / blebbistatin / untreated |
microEnvironment | Fibronectin coated lanes on ibidi µ-dish |
medium | L15 + 10% FBS |
cellType | MDA-MB-231 H2B mCherry |
organism | Homo Sapiens |
modality | phase-contrast, fluorescence microscopy |
imageSequenceType | time-series |
observationPeriod | 48 |
observationPeriodUnit | hours |
timeSeriesInterval | 30 / 6000 |
timeSeriesIntervalUnit | seconds |
pixels | 1.32 |
objectiveLens | Nikon CFI Plan Fluor DL 10x |
numericalAperture | 0.3 |
Contact
Corresponding author: Joachim O. Rädler, Fakultät für Physik, Ludwig-Maximilians-Universität München (LMU), Munich, Germany, raedler@lmu.de
Johannes C. J. Heyn and Christoph Schreiber executed experiments.